IL_8BN3_030

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

8BN3|1|1|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_030 not in the Motif Atlas

Geometric match to IL_5TBW_029

Geometric discrepancy: 0.0802

The information below is about IL_5TBW_029

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8BN3|1|1|G|833
8BN3|1|1|U|834
*
8BN3|1|1|G|859
8BN3|1|1|G|860
8BN3|1|1|C|861

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain M9

60S ribosomal protein L19-A

Chain Q3

60S ribosomal protein L43-A