3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGUU*AUC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BN3_032 not in the Motif Atlas
Homologous match to IL_5TBW_031
Geometric discrepancy: 0.0516
The information below is about IL_5TBW_031
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

8BN3|1|1|G|869
8BN3|1|1|G|870
8BN3|1|1|U|871
8BN3|1|1|U|872
*
8BN3|1|1|A|888
8BN3|1|1|U|889
8BN3|1|1|C|890

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L3
60S ribosomal protein L3
Chain O7
Large ribosomal subunit protein eL37A

Coloring options:


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