IL_8BN3_042

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_042 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.0621

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8BN3|1|1|A|1006
8BN3|1|1|U|1007
8BN3|1|1|U|1008
8BN3|1|1|A|1009
*
8BN3|1|1|U|1041
8BN3|1|1|U|1042
8BN3|1|1|C|1043
8BN3|1|1|U|1044

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L5

RPL5 isoform 1

Chain M0

RPL10 isoform 1