IL_8BN3_045

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGU,ACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_045 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.2718

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BN3|1|1|G|1020
8BN3|1|1|G|1021
8BN3|1|1|U|1022
*
8BN3|1|1|A|1030
8BN3|1|1|C|1031
8BN3|1|1|C|1032

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain SM

STM1 isoform 1