IL_8BN3_047

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

8BN3|1|1|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_047 not in the Motif Atlas

Homologous match to IL_5TBW_045

Geometric discrepancy: 0.0816

The information below is about IL_5TBW_045

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BN3|1|1|U|1074
8BN3|1|1|A|1075
8BN3|1|1|C|1076
*
8BN3|1|1|G|1083
8BN3|1|1|A|1084

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L5

RPL5 isoform 1

Chain N1

60S ribosomal protein L21-A

Chain N9

60S ribosomal protein L29