IL_8BN3_055

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8BN3|1|1|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_055 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.0912

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BN3|1|1|G|1207
8BN3|1|1|U|1208
8BN3|1|1|G|1209
*
8BN3|1|1|C|1296
8BN3|1|1|C|1297

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain L9

RPL9A isoform 1

Chain N0

60S ribosomal protein L20-A

Chain Q0

60S ribosomal protein L40-A