3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
8BN3|1|1|U|2205
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BN3_088 not in the Motif Atlas
Homologous match to IL_5TBW_086
Geometric discrepancy: 0.4169
The information below is about IL_5TBW_086
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

8BN3|1|1|C|2204
8BN3|1|1|U|2205
8BN3|1|1|G|2206
*
8BN3|1|1|C|2237
8BN3|1|1|G|2238

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain L2
60S ribosomal protein L2-A
Chain eI
Eukaryotic translation initiation factor 5A

Coloring options:


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