IL_8BN3_099

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8BN3|1|1|A|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_099 not in the Motif Atlas

Homologous match to IL_8C3A_107

Geometric discrepancy: 0.0693

The information below is about IL_8C3A_107

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BN3|1|1|G|2614
8BN3|1|1|G|2615
*
8BN3|1|1|C|2625
8BN3|1|1|A|2626
8BN3|1|1|C|2627

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M0

RPL10 isoform 1

Chain N1

60S ribosomal protein L21-A

Chain N9

60S ribosomal protein L29

Chain Q2

60S ribosomal protein L42-A

Chain eI

Eukaryotic translation initiation factor 5A