IL_8BN3_127

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8BN3|1|1|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_127 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.1226

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BN3|1|1|C|3193
8BN3|1|1|C|3194
*
8BN3|1|1|G|3197
8BN3|1|1|U|3198
8BN3|1|1|G|3199

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L9

RPL9A isoform 1

Chain M4

60S ribosomal protein L14-A

Chain M6

60S ribosomal protein L16-A