IL_8BN3_147

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

8BN3|1|2|C|114, 8BN3|1|2|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_147 not in the Motif Atlas

Homologous match to IL_8C3A_400

Geometric discrepancy: 0.092

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8BN3|1|2|U|113
8BN3|1|2|C|114
8BN3|1|2|G|115
8BN3|1|2|U|116
*
8BN3|1|2|A|300
8BN3|1|2|A|301

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

Small ribosomal subunit protein uS17A

Chain S4

Small ribosomal subunit protein eS4A

Chain S8

40S ribosomal protein S8