IL_8BN3_148

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_148 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.0865

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

8BN3|1|2|U|117
8BN3|1|2|U|118
8BN3|1|2|A|119
8BN3|1|2|U|120
8BN3|1|2|U|121
8BN3|1|2|U|122
*
8BN3|1|2|A|295
8BN3|1|2|U|296
8BN3|1|2|U|297
8BN3|1|2|C|298
8BN3|1|2|A|299

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

Small ribosomal subunit protein eS4A

Chain S8

40S ribosomal protein S8