IL_8BN3_155

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

8BN3|1|2|A|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_155 not in the Motif Atlas

Homologous match to IL_4V88_399

Geometric discrepancy: 0.1141

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BN3|1|2|A|265
8BN3|1|2|A|266
8BN3|1|2|U|267
*
8BN3|1|2|A|288
8BN3|1|2|U|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

Small ribosomal subunit protein eS4A

Chain S6

Small ribosomal subunit protein eS6A