IL_8BN3_160

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8BN3|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_160 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.0694

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BN3|1|2|G|363
8BN3|1|2|G|364
8BN3|1|2|G|365
*
8BN3|1|2|C|376
8BN3|1|2|G|377
8BN3|1|2|A|378
8BN3|1|2|U|379
8BN3|1|2|U|380
8BN3|1|2|C|381

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain S4

Small ribosomal subunit protein eS4A

Chain S9

Small ribosomal subunit protein uS4A