IL_8BN3_161

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_161 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.0526

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8BN3|1|2|G|389
8BN3|1|2|G|390
8BN3|1|2|A|391
*
8BN3|1|2|U|406
8BN3|1|2|A|407
8BN3|1|2|C|408

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

Small ribosomal subunit protein eS6A

Chain S8

40S ribosomal protein S8