IL_8BN3_165

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUACA*UGUAAUU

Length

13 nucleotides

Bulged bases

8BN3|1|2|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_165 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3777

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8BN3|1|2|G|480
8BN3|1|2|A|481
8BN3|1|2|U|482
8BN3|1|2|A|483
8BN3|1|2|C|484
8BN3|1|2|A|485
*
8BN3|1|2|U|502
8BN3|1|2|G|503
8BN3|1|2|U|504
8BN3|1|2|A|505
8BN3|1|2|A|506
8BN3|1|2|U|507
8BN3|1|2|U|508

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E0

40S ribosomal protein S30-A

Chain S9

Small ribosomal subunit protein uS4A