IL_8BN3_170

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8BN3|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_170 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.0938

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8BN3|1|2|G|616
8BN3|1|2|U|617
8BN3|1|2|U|618
8BN3|1|2|A|619
8BN3|1|2|A|620
8BN3|1|2|A|621
8BN3|1|2|A|622
*
8BN3|1|2|U|1091
8BN3|1|2|C|1092

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain D6

RPS26B isoform 1