IL_8BN3_178

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_178 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.4843

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BN3|1|2|A|817
8BN3|1|2|C|818
8BN3|1|2|G|819
8BN3|1|2|U|820
8BN3|1|2|U|821
8BN3|1|2|U|822
*
8BN3|1|2|A|850
8BN3|1|2|U|851
8BN3|1|2|C|852
8BN3|1|2|G|853
8BN3|1|2|U|854

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A