IL_8BN3_187
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 8BN3|1|2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BN3_187 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2564
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8BN3|1|2|U|893
8BN3|1|2|U|894
8BN3|1|2|G|895
8BN3|1|2|U|896
8BN3|1|2|C|897
8BN3|1|2|A|898
8BN3|1|2|G|899
*
8BN3|1|2|C|910
8BN3|1|2|U|911
8BN3|1|2|U|912
8BN3|1|2|G|913
8BN3|1|2|G|914
8BN3|1|2|A|915
8BN3|1|2|U|916
8BN3|1|2|U|917
8BN3|1|2|U|918
8BN3|1|2|A|919
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C4
- 40S ribosomal protein S14-B
- Chain L2
- 60S ribosomal protein L2-A
- Chain S1
- Small ribosomal subunit protein eS1
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