IL_8BN3_189
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BN3_189 not in the Motif Atlas
- Homologous match to IL_8C3A_442
- Geometric discrepancy: 0.1284
- The information below is about IL_8C3A_442
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8BN3|1|2|C|990
8BN3|1|2|G|991
8BN3|1|2|A|992
8BN3|1|2|A|993
8BN3|1|2|G|994
*
8BN3|1|2|C|1010
8BN3|1|2|G|1011
8BN3|1|2|U|1012
8BN3|1|2|A|1013
8BN3|1|2|G|1014
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C4
- 40S ribosomal protein S14-B
- Chain D6
- RPS26B isoform 1
- Chain L2
- 60S ribosomal protein L2-A
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