IL_8BN3_194

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8BN3|1|2|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_194 not in the Motif Atlas

Homologous match to IL_8C3A_447

Geometric discrepancy: 0.0976

The information below is about IL_8C3A_447

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8BN3|1|2|G|1133
8BN3|1|2|A|1134
*
8BN3|1|2|U|1617
8BN3|1|2|A|1618
8BN3|1|2|C|1619

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D6

RPS26B isoform 1

Chain S2

RPS2 isoform 1