IL_8BN3_216

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_216 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.0798

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BN3|1|2|G|1527
8BN3|1|2|G|1528
8BN3|1|2|G|1529
8BN3|1|2|A|1530
8BN3|1|2|U|1531
8BN3|1|2|A|1532
*
8BN3|1|2|U|1553
8BN3|1|2|U|1554
8BN3|1|2|C|1555
8BN3|1|2|A|1556
8BN3|1|2|A|1557
8BN3|1|2|C|1558

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A