IL_8BN3_229

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

8BN3|1|3|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_229 not in the Motif Atlas

Homologous match to IL_8C3A_143

Geometric discrepancy: 0.0909

The information below is about IL_8C3A_143

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8BN3|1|3|C|15
8BN3|1|3|U|16
*
8BN3|1|3|A|63
8BN3|1|3|A|64
8BN3|1|3|G|65

Current chains

Chain 3

5S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain L5

RPL5 isoform 1

Chain M0

RPL10 isoform 1

Chain M1

RPL11B isoform 1