IL_8BN3_242

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGACC*GGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_242 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.3573

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8BN3|1|2|C|186
8BN3|1|2|G|187
8BN3|1|2|A|188
8BN3|1|2|C|189
8BN3|1|2|C|190
*
8BN3|1|2|G|195
8BN3|1|2|G|196
8BN3|1|2|A|197
8BN3|1|2|A|198
8BN3|1|2|G|199

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S8

40S ribosomal protein S8