IL_8BPO_007

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

8BPO|1|A1|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_007 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.233

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8BPO|1|A1|C|118
8BPO|1|A1|G|119
8BPO|1|A1|A|120
8BPO|1|A1|A|121
*
8BPO|1|A1|U|152
8BPO|1|A1|G|153

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain G2

60S ribosomal protein L7a

Chain M2

Ribosomal protein L15

Chain g2

60S ribosomal protein L35