IL_8BPO_019
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_019 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.0845
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BPO|1|A1|G|415
8BPO|1|A1|U|416
8BPO|1|A1|G|417
8BPO|1|A1|A|418
8BPO|1|A1|A|419
8BPO|1|A1|A|420
8BPO|1|A1|C|421
*
8BPO|1|C1|G|13
8BPO|1|C1|U|14
8BPO|1|C1|G|15
8BPO|1|C1|G|16
8BPO|1|C1|A|17
8BPO|1|C1|U|18
8BPO|1|C1|C|19
Current chains
- Chain A1
- 28S ribosomal RNA
- Chain C1
- 5.8S ribosomal RNA
Nearby chains
- Chain C2
- 60S ribosomal protein L4
- Chain O2
- 60S ribosomal protein L17
- Chain d2
- Ribosomal protein L32
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