IL_8BPO_030

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8BPO|1|A1|C|498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_030 not in the Motif Atlas

Geometric match to IL_3SNP_003

Geometric discrepancy: 0.3975

The information below is about IL_3SNP_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8BPO|1|A1|G|497
8BPO|1|A1|C|498
8BPO|1|A1|G|499
*
8BPO|1|A1|C|656
8BPO|1|A1|C|657

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C2

60S ribosomal protein L4