IL_8BPO_031

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8BPO|1|A1|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_031 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2402

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8BPO|1|A1|G|508
8BPO|1|A1|A|509
8BPO|1|A1|U|510
*
8BPO|1|A1|A|649
8BPO|1|A1|C|650

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain K2

60S ribosomal protein L13

Chain Z2

60S ribosomal protein L27a