IL_8BPO_034

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCU*GGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_034 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.224

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8BPO|1|A1|C|517
8BPO|1|A1|G|518
8BPO|1|A1|C|519
8BPO|1|A1|U|520
*
8BPO|1|A1|G|641
8BPO|1|A1|G|642
8BPO|1|A1|C|643
8BPO|1|A1|G|644

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain K2

60S ribosomal protein L13