IL_8BPO_037

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

8BPO|1|A1|G|729, 8BPO|1|A1|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_037 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.0783

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8BPO|1|A1|C|727
8BPO|1|A1|U|728
8BPO|1|A1|G|729
8BPO|1|A1|G|730
8BPO|1|A1|G|731
*
8BPO|1|A1|C|938
8BPO|1|A1|G|939

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain F2

60S ribosomal protein L7

Chain L2

60S ribosomal protein L14

Chain R2

60S ribosomal protein L18a