IL_8BPO_038

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

8BPO|1|A1|A|932, 8BPO|1|A1|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|A|732
8BPO|1|A1|A|733
8BPO|1|A1|G|734
8BPO|1|A1|G|735
*
8BPO|1|A1|C|928
8BPO|1|A1|A|929
8BPO|1|A1|G|930
8BPO|1|A1|C|931
8BPO|1|A1|A|932
8BPO|1|A1|G|933
8BPO|1|A1|C|934
8BPO|1|A1|A|935
8BPO|1|A1|G|935|||A
8BPO|1|A1|C|936
8BPO|1|A1|U|937

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C2

60S ribosomal protein L4

Chain L2

60S ribosomal protein L14

Chain R2

60S ribosomal protein L18a