IL_8BPO_039

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

8BPO|1|A1|C|738, 8BPO|1|A1|C|738|||A, 8BPO|1|A1|C|924, 8BPO|1|A1|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_039 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2557

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8BPO|1|A1|C|737
8BPO|1|A1|C|738
8BPO|1|A1|C|738|||A
8BPO|1|A1|G|739
*
8BPO|1|A1|C|923
8BPO|1|A1|C|924
8BPO|1|A1|C|925
8BPO|1|A1|G|926

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L14