IL_8BPO_077

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_077 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.1164

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8BPO|1|A1|C|1911
8BPO|1|A1|G|1912
8BPO|1|A1|C|1913
8BPO|1|A1|C|1914
8BPO|1|A1|C|1915
8BPO|1|A1|G|1916
8BPO|1|A1|A|1917
8BPO|1|A1|U|1918
*
8BPO|1|A1|G|2064
8BPO|1|A1|G|2065

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain F2

60S ribosomal protein L7

Chain N2

60S ribosomal protein L13a

Chain R2

60S ribosomal protein L18a

Chain e2

60S ribosomal protein L35a