IL_8BPO_078
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGC*GG
- Length
- 5 nucleotides
- Bulged bases
- 8BPO|1|A1|G|1919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_078 not in the Motif Atlas
- Geometric match to IL_7D7V_002
- Geometric discrepancy: 0.3899
- The information below is about IL_7D7V_002
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_28408.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 69
Unit IDs
8BPO|1|A1|U|1918
8BPO|1|A1|G|1919
8BPO|1|A1|C|1920
*
8BPO|1|A1|G|2063
8BPO|1|A1|G|2064
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain F2
- 60S ribosomal protein L7
- Chain N2
- 60S ribosomal protein L13a
- Chain R2
- 60S ribosomal protein L18a
- Chain e2
- 60S ribosomal protein L35a
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