IL_8BPO_082

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8BPO|1|A1|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_082 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.0978

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BPO|1|A1|G|1946
8BPO|1|A1|U|1947
8BPO|1|A1|G|1948
*
8BPO|1|A1|C|2035
8BPO|1|A1|C|2036

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B1

5S ribosomal RNA; 5S rRNA

Chain H2

60S ribosomal protein L9

Chain R2

60S ribosomal protein L18a

Chain l2

Ubiquitin-60S ribosomal protein L40