IL_8BPO_083

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUAGACAGCA*UGCCGAA

Length

18 nucleotides

Bulged bases

8BPO|1|A1|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|U|1957
8BPO|1|A1|A|1958
8BPO|1|A1|U|1959
8BPO|1|A1|A|1960
8BPO|1|A1|G|1961
8BPO|1|A1|A|1962
8BPO|1|A1|C|1963
8BPO|1|A1|A|1964
8BPO|1|A1|G|1965
8BPO|1|A1|C|1966
8BPO|1|A1|A|1967
*
8BPO|1|A1|U|2020
8BPO|1|A1|G|2021
8BPO|1|A1|C|2022
8BPO|1|A1|C|2023
8BPO|1|A1|G|2024
8BPO|1|A1|A|2025
8BPO|1|A1|A|2026

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain l2

Ubiquitin-60S ribosomal protein L40

Chain q2

60S acidic ribosomal protein P0