IL_8BPO_095

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_095 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.308

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8BPO|1|A1|G|2542
8BPO|1|A1|A|2543
8BPO|1|A1|G|2544
8BPO|1|A1|U|2545
8BPO|1|A1|G|2546
8BPO|1|A1|G|2547
*
8BPO|1|A1|C|2772
8BPO|1|A1|G|2773
8BPO|1|A1|C|2774

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C1

5.8S ribosomal RNA; 5.8S rRNA

Chain j2

60S ribosomal protein L38