IL_8BPO_116

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8BPO|1|A1|A|3711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_116 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.3253

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8BPO|1|A1|G|3710
8BPO|1|A1|A|3711
8BPO|1|A1|A|3712
8BPO|1|A1|U|3713
8BPO|1|A1|G|3714
*
8BPO|1|A1|C|3739
8BPO|1|A1|G|3740
8BPO|1|A1|C|3741

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain A2

60S ribosomal protein L8