IL_8BPO_122

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8BPO|1|A1|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_122 not in the Motif Atlas

Homologous match to IL_5TBW_093

Geometric discrepancy: 0.0662

The information below is about IL_5TBW_093

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BPO|1|A1|G|3913
8BPO|1|A1|U|3914
8BPO|1|A1|U|3915
*
8BPO|1|A1|A|4388
8BPO|1|A1|C|4389

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C2

60S ribosomal protein L4

Chain Z2

60S ribosomal protein L27a