IL_8BPO_127
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 8BPO|1|A1|G|4084, 8BPO|1|A1|C|4162, 8BPO|1|A1|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_127 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.21
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8BPO|1|A1|G|4082
8BPO|1|A1|U|4083
8BPO|1|A1|G|4084
8BPO|1|A1|A|4085
8BPO|1|A1|G|4086
8BPO|1|A1|G|4087
8BPO|1|A1|C|4088
*
8BPO|1|A1|G|4161
8BPO|1|A1|C|4162
8BPO|1|A1|U|4163
8BPO|1|A1|C|4164
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L8
- Chain C1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G2
- 60S ribosomal protein L7a
- Chain W2
- Ribosomal_L23eN domain-containing protein
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