IL_8BPO_138

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_138 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.0973

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8BPO|1|A1|C|4412
8BPO|1|A1|C|4413
8BPO|1|A1|A|4414
8BPO|1|A1|A|4415
8BPO|1|A1|G|4416
*
8BPO|1|A1|C|4426
8BPO|1|A1|G|4427
8BPO|1|A1|A|4428
8BPO|1|A1|C|4429
8BPO|1|A1|G|4430

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain I2

Ribosomal protein L10

Chain l2

Ubiquitin-60S ribosomal protein L40