IL_8BPO_155

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAGC*GAACCUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|C|4739
8BPO|1|A1|G|4740
8BPO|1|A1|G|4743
8BPO|1|A1|A|4744
8BPO|1|A1|G|4745
8BPO|1|A1|C|4746
*
8BPO|1|A1|G|4954
8BPO|1|A1|A|4955
8BPO|1|A1|A|4956
8BPO|1|A1|C|4957
8BPO|1|A1|C|4958
8BPO|1|A1|U|4959
8BPO|1|A1|G|4960

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C1

5.8S ribosomal RNA; 5.8S rRNA