IL_8BPO_166

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

8BPO|1|A1|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|U|5003
8BPO|1|A1|C|5004
8BPO|1|A1|G|5005
8BPO|1|A1|U|5006
8BPO|1|A1|A|5007
8BPO|1|A1|C|5008
8BPO|1|A1|G|5009
*
8BPO|1|A1|U|5039
8BPO|1|A1|U|5040
8BPO|1|A1|G|5041
8BPO|1|A1|A|5042
8BPO|1|A1|A|5043
8BPO|1|A1|A|5044

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B2

Ribosomal protein L3

Chain V2

Ribosomal protein L24

Chain c2

60S ribosomal protein L31