IL_8BPO_179
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UAUAGACAGCAGGAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGU*ACUCACCUGCCGAA
- Length
- 64 nucleotides
- Bulged bases
- 8BPO|1|A1|A|1960, 8BPO|1|A1|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|U|1957
8BPO|1|A1|A|1958
8BPO|1|A1|U|1959
8BPO|1|A1|A|1960
8BPO|1|A1|G|1961
8BPO|1|A1|A|1962
8BPO|1|A1|C|1963
8BPO|1|A1|A|1964
8BPO|1|A1|G|1965
8BPO|1|A1|C|1966
8BPO|1|A1|A|1967
8BPO|1|A1|G|1968
8BPO|1|A1|G|1969
8BPO|1|A1|A|1970
8BPO|1|A1|U|1971
8BPO|1|A1|G|1972
8BPO|1|A1|G|1973
8BPO|1|A1|U|1974
8BPO|1|A1|G|1975
8BPO|1|A1|G|1976
8BPO|1|A1|C|1977
8BPO|1|A1|C|1978
8BPO|1|A1|A|1979
8BPO|1|A1|U|1980
8BPO|1|A1|G|1981
8BPO|1|A1|G|1982
8BPO|1|A1|A|1983
8BPO|1|A1|A|1984
8BPO|1|A1|G|1985
8BPO|1|A1|U|1986
8BPO|1|A1|C|1987
8BPO|1|A1|G|1988
8BPO|1|A1|G|1989
8BPO|1|A1|A|1990
8BPO|1|A1|A|1991
8BPO|1|A1|U|1992
8BPO|1|A1|C|1993
8BPO|1|A1|C|1994
8BPO|1|A1|G|1995
8BPO|1|A1|C|1996
8BPO|1|A1|U|1997
8BPO|1|A1|A|1998
8BPO|1|A1|A|1999
8BPO|1|A1|G|2000
8BPO|1|A1|G|2001
8BPO|1|A1|A|2002
8BPO|1|A1|G|2003
8BPO|1|A1|U|2004
8BPO|1|A1|G|2005
8BPO|1|A1|U|2006
*
8BPO|1|A1|A|2013
8BPO|1|A1|C|2014
8BPO|1|A1|U|2015
8BPO|1|A1|C|2016
8BPO|1|A1|A|2017
8BPO|1|A1|C|2018
8BPO|1|A1|C|2019
8BPO|1|A1|U|2020
8BPO|1|A1|G|2021
8BPO|1|A1|C|2022
8BPO|1|A1|C|2023
8BPO|1|A1|G|2024
8BPO|1|A1|A|2025
8BPO|1|A1|A|2026
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain I2
- Ribosomal protein L10
- Chain l2
- Ubiquitin-60S ribosomal protein L40
- Chain q2
- 60S acidic ribosomal protein P0
- Chain r2
- 60S ribosomal protein L12
Coloring options: