IL_8BPO_188
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCGAGC*GGCUCU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_188 not in the Motif Atlas
- Geometric match to IL_3D0M_003
- Geometric discrepancy: 0.3662
- The information below is about IL_3D0M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52736.1
- Basepair signature
- cWW-cHW-L-R-L-R-cWH-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BPO|1|A1|G|4095
8BPO|1|A1|C|4096
8BPO|1|A1|G|4097
8BPO|1|A1|A|4098
8BPO|1|A1|G|4099
8BPO|1|A1|C|4100
*
8BPO|1|A1|G|4108
8BPO|1|A1|G|4109
8BPO|1|A1|C|4110
8BPO|1|A1|U|4111
8BPO|1|A1|C|4112
8BPO|1|A1|U|4113
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L8
- Chain G2
- 60S ribosomal protein L7a
- Chain f2
- 60S ribosomal protein L34
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