IL_8BRM_002

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCGGAUG*CUGAACC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_002 not in the Motif Atlas

Geometric match to IL_5TBW_015

Geometric discrepancy: 0.1115

The information below is about IL_5TBW_015

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BRM|1|LD|G|14
8BRM|1|LD|C|15
8BRM|1|LD|G|16
8BRM|1|LD|G|17
8BRM|1|LD|A|18
8BRM|1|LD|U|19
8BRM|1|LD|G|20
*
8BRM|1|Lt|C|354
8BRM|1|Lt|U|355
8BRM|1|Lt|G|356
8BRM|1|Lt|A|357
8BRM|1|Lt|A|358
8BRM|1|Lt|C|359
8BRM|1|Lt|C|360

Current chains

Chain LD

5.8S rRNA

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LQ

Ribosomal protein L17

Chain Lf

Ribosomal protein L32