IL_8BRM_012

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8BRM|1|LE|U|85

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_012 not in the Motif Atlas

Homologous match to IL_4V9F_107

Geometric discrepancy: 0.3203

The information below is about IL_4V9F_107

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8BRM|1|LE|A|84
8BRM|1|LE|U|85
8BRM|1|LE|C|86
*
8BRM|1|LE|G|93
8BRM|1|LE|U|94

Current chains

Chain LE

5S rRNA

Nearby chains

Chain LH

Ribosomal protein L7

Chain LK

Ribosomal protein L10

Chain LT

Ribosomal protein L18a

Chain Lt

Large subunit ribosomal RNA; LSU rRNA