IL_8BRM_013

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CG*CCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_013 not in the Motif Atlas

Homologous match to IL_8C3A_004

Geometric discrepancy: 0.1627

The information below is about IL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8BRM|1|Lt|C|26
8BRM|1|Lt|G|27
*
8BRM|1|Lt|C|55
8BRM|1|Lt|C|56
8BRM|1|Lt|G|57

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LD

5.8S rRNA

Chain LM

Ribosomal protein L13

Chain LO

Ribosomal protein L15

Chain Li

Ribosomal protein L29

Chain Lk

Ribosomal protein L37