IL_8BRM_014
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGAACUU*AUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- 8BRM|1|Lt|G|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_014 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.2756
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8BRM|1|Lt|G|31
8BRM|1|Lt|G|32
8BRM|1|Lt|A|33
8BRM|1|Lt|A|34
8BRM|1|Lt|C|35
8BRM|1|Lt|U|36
8BRM|1|Lt|U|37
*
8BRM|1|Lt|A|44
8BRM|1|Lt|U|45
8BRM|1|Lt|C|46
8BRM|1|Lt|A|47
8BRM|1|Lt|G|48
8BRM|1|Lt|U|49
8BRM|1|Lt|A|50
8BRM|1|Lt|C|51
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LM
- Ribosomal protein L13
- Chain LO
- Ribosomal protein L15
- Chain Lb
- Ribosomal protein L27a
- Chain Lk
- Ribosomal protein L37
- Chain Lp
- Ribosomal protein L44
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