IL_8BRM_016

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAAG*CGCUGUG

Length

12 nucleotides

Bulged bases

8BRM|1|Lt|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|C|116
8BRM|1|Lt|G|117
8BRM|1|Lt|A|118
8BRM|1|Lt|A|119
8BRM|1|Lt|G|120
*
8BRM|1|Lt|C|124
8BRM|1|Lt|G|125
8BRM|1|Lt|C|126
8BRM|1|Lt|U|127
8BRM|1|Lt|G|128
8BRM|1|Lt|U|129
8BRM|1|Lt|G|130

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LD

5.8S rRNA

Chain LI

Ribosomal protein L7a

Chain LO

Ribosomal protein L15

Chain Li

Ribosomal protein L29