IL_8BRM_029

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8BRM|1|Lt|G|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_029 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.1685

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8BRM|1|Lt|A|698
8BRM|1|Lt|G|699
8BRM|1|Lt|U|700
*
8BRM|1|Lt|A|810
8BRM|1|Lt|U|811

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LH

Ribosomal protein L7

Chain LR

Ribosomal protein L18

Chain LU

Ribosomal protein L21

Chain Lc

Ribosomal protein L29